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        <div class="color-fg-default h4">Issues</div>
        Plan and track work
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</a></li>

                <li>
  <a class="HeaderMenu-dropdown-link lh-condensed d-block no-underline position-relative py-2 Link--secondary d-flex flex-items-center" data-analytics-event="{&quot;category&quot;:&quot;Header dropdown (logged out), Product&quot;,&quot;action&quot;:&quot;click to go to Discussions&quot;,&quot;label&quot;:&quot;ref_cta:Discussions;&quot;}" href="/features/discussions">
      <svg aria-hidden="true" height="24" viewBox="0 0 24 24" version="1.1" width="24" data-view-component="true" class="octicon octicon-comment-discussion color-fg-subtle mr-3">
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      <div>
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        Collaborate outside of code
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          <div class="px-lg-4">
              <span class="d-block h4 color-fg-default my-1" id="product-explore-heading">Explore</span>
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  <a class="HeaderMenu-dropdown-link lh-condensed d-block no-underline position-relative py-2 Link--secondary" data-analytics-event="{&quot;category&quot;:&quot;Header dropdown (logged out), Product&quot;,&quot;action&quot;:&quot;click to go to All features&quot;,&quot;label&quot;:&quot;ref_cta:All features;&quot;}" href="/features">
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      Documentation

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      Blog

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        Solutions
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              <span class="d-block h4 color-fg-default my-1" id="solutions-for-heading">For</span>
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  <a class="HeaderMenu-dropdown-link lh-condensed d-block no-underline position-relative py-2 Link--secondary" data-analytics-event="{&quot;category&quot;:&quot;Header dropdown (logged out), Solutions&quot;,&quot;action&quot;:&quot;click to go to Enterprise&quot;,&quot;label&quot;:&quot;ref_cta:Enterprise;&quot;}" href="/enterprise">
      Enterprise

    
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  <a class="HeaderMenu-dropdown-link lh-condensed d-block no-underline position-relative py-2 Link--secondary" data-analytics-event="{&quot;category&quot;:&quot;Header dropdown (logged out), Solutions&quot;,&quot;action&quot;:&quot;click to go to Teams&quot;,&quot;label&quot;:&quot;ref_cta:Teams;&quot;}" href="/team">
      Teams

    
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  <a class="HeaderMenu-dropdown-link lh-condensed d-block no-underline position-relative py-2 Link--secondary" data-analytics-event="{&quot;category&quot;:&quot;Header dropdown (logged out), Solutions&quot;,&quot;action&quot;:&quot;click to go to Startups&quot;,&quot;label&quot;:&quot;ref_cta:Startups;&quot;}" href="/enterprise/startups">
      Startups

    
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  <a class="HeaderMenu-dropdown-link lh-condensed d-block no-underline position-relative py-2 Link--secondary" target="_blank" data-analytics-event="{&quot;category&quot;:&quot;Header dropdown (logged out), Solutions&quot;,&quot;action&quot;:&quot;click to go to Education&quot;,&quot;label&quot;:&quot;ref_cta:Education;&quot;}" href="https://education.github.com">
      Education

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          </div>
          <div class="border-bottom pb-3 mb-3">
              <span class="d-block h4 color-fg-default my-1" id="solutions-by-solution-heading">By Solution</span>
            <ul class="list-style-none f5" aria-labelledby="solutions-by-solution-heading">
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  <a class="HeaderMenu-dropdown-link lh-condensed d-block no-underline position-relative py-2 Link--secondary" data-analytics-event="{&quot;category&quot;:&quot;Header dropdown (logged out), Solutions&quot;,&quot;action&quot;:&quot;click to go to CI/CD &amp;amp; Automation&quot;,&quot;label&quot;:&quot;ref_cta:CI/CD &amp;amp; Automation;&quot;}" href="/solutions/ci-cd/">
      CI/CD &amp; Automation

    
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  <a class="HeaderMenu-dropdown-link lh-condensed d-block no-underline position-relative py-2 Link--secondary" target="_blank" data-analytics-event="{&quot;category&quot;:&quot;Header dropdown (logged out), Solutions&quot;,&quot;action&quot;:&quot;click to go to DevOps&quot;,&quot;label&quot;:&quot;ref_cta:DevOps;&quot;}" href="https://resources.github.com/devops/">
      DevOps

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  <a class="HeaderMenu-dropdown-link lh-condensed d-block no-underline position-relative py-2 Link--secondary" target="_blank" data-analytics-event="{&quot;category&quot;:&quot;Header dropdown (logged out), Solutions&quot;,&quot;action&quot;:&quot;click to go to DevSecOps&quot;,&quot;label&quot;:&quot;ref_cta:DevSecOps;&quot;}" href="https://resources.github.com/devops/fundamentals/devsecops/">
      DevSecOps

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</svg>
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          <div class="">
              <span class="d-block h4 color-fg-default my-1" id="solutions-resources-heading">Resources</span>
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  <a class="HeaderMenu-dropdown-link lh-condensed d-block no-underline position-relative py-2 Link--secondary" data-analytics-event="{&quot;category&quot;:&quot;Header dropdown (logged out), Solutions&quot;,&quot;action&quot;:&quot;click to go to Customer Stories&quot;,&quot;label&quot;:&quot;ref_cta:Customer Stories;&quot;}" href="/customer-stories">
      Customer Stories

    
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                <li>
  <a class="HeaderMenu-dropdown-link lh-condensed d-block no-underline position-relative py-2 Link--secondary" target="_blank" data-analytics-event="{&quot;category&quot;:&quot;Header dropdown (logged out), Solutions&quot;,&quot;action&quot;:&quot;click to go to White papers, Ebooks, Webinars&quot;,&quot;label&quot;:&quot;ref_cta:White papers, Ebooks, Webinars;&quot;}" href="https://resources.github.com/">
      White papers, Ebooks, Webinars

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  <a class="HeaderMenu-dropdown-link lh-condensed d-block no-underline position-relative py-2 Link--secondary" target="_blank" data-analytics-event="{&quot;category&quot;:&quot;Header dropdown (logged out), Solutions&quot;,&quot;action&quot;:&quot;click to go to Partners&quot;,&quot;label&quot;:&quot;ref_cta:Partners;&quot;}" href="https://partner.github.com/">
      Partners

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  <a class="HeaderMenu-dropdown-link lh-condensed d-block no-underline position-relative py-2 Link--secondary d-flex flex-items-center" data-analytics-event="{&quot;category&quot;:&quot;Header dropdown (logged out), Open Source&quot;,&quot;action&quot;:&quot;click to go to GitHub Sponsors&quot;,&quot;label&quot;:&quot;ref_cta:GitHub Sponsors;&quot;}" href="/sponsors">
      
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        GitHub community articles
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              <span class="d-block h4 color-fg-default my-1" id="open-source-repositories-heading">Repositories</span>
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      Collections

    
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        <div class="mr-2 color-fg-muted">
          <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-search">
    <path d="M10.68 11.74a6 6 0 0 1-7.922-8.982 6 6 0 0 1 8.982 7.922l3.04 3.04a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215ZM11.5 7a4.499 4.499 0 1 0-8.997 0A4.499 4.499 0 0 0 11.5 7Z"></path>
</svg>
        </div>
        <span class="flex-1" data-target="qbsearch-input.inputButtonText">Search or jump to...</span>
          <div class="d-flex" data-target="qbsearch-input.hotkeyIndicator">
            <svg xmlns="http://www.w3.org/2000/svg" width="22" height="20" aria-hidden="true" class="mr-1"><path fill="none" stroke="#979A9C" opacity=".4" d="M3.5.5h12c1.7 0 3 1.3 3 3v13c0 1.7-1.3 3-3 3h-12c-1.7 0-3-1.3-3-3v-13c0-1.7 1.3-3 3-3z"></path><path fill="#979A9C" d="M11.8 6L8 15.1h-.9L10.8 6h1z"></path></svg>

          </div>
      </button>

    <input type="hidden" name="type" class="js-site-search-type-field">

    
<div class="Overlay--hidden " data-modal-dialog-overlay>
  <modal-dialog data-action="close:qbsearch-input#handleClose cancel:qbsearch-input#handleClose" data-target="qbsearch-input.searchSuggestionsDialog" role="dialog" id="search-suggestions-dialog" aria-modal="true" aria-labelledby="search-suggestions-dialog-header" data-view-component="true" class="Overlay Overlay--width-large Overlay--height-auto">
      <h1 id="search-suggestions-dialog-header" class="sr-only">Search code, repositories, users, issues, pull requests...</h1>
    <div class="Overlay-body Overlay-body--paddingNone">
      
          <div data-view-component="true">        <div class="search-suggestions position-fixed width-full color-shadow-large border color-fg-default color-bg-default overflow-hidden d-flex flex-column query-builder-container"
          style="border-radius: 12px;"
          data-target="qbsearch-input.queryBuilderContainer"
          hidden
        >
          <!-- '"` --><!-- </textarea></xmp> --></option></form><form id="query-builder-test-form" action="" accept-charset="UTF-8" method="get">
  <query-builder data-target="qbsearch-input.queryBuilder" id="query-builder-query-builder-test" data-filter-key=":" data-view-component="true" class="QueryBuilder search-query-builder">
    <div class="FormControl FormControl--fullWidth">
      <label id="query-builder-test-label" for="query-builder-test" class="FormControl-label sr-only">
        Search
      </label>
      <div
        class="QueryBuilder-StyledInput width-fit "
        data-target="query-builder.styledInput"
      >
          <span id="query-builder-test-leadingvisual-wrap" class="FormControl-input-leadingVisualWrap QueryBuilder-leadingVisualWrap">
            <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-search FormControl-input-leadingVisual">
    <path d="M10.68 11.74a6 6 0 0 1-7.922-8.982 6 6 0 0 1 8.982 7.922l3.04 3.04a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215ZM11.5 7a4.499 4.499 0 1 0-8.997 0A4.499 4.499 0 0 0 11.5 7Z"></path>
</svg>
          </span>
        <div data-target="query-builder.styledInputContainer" class="QueryBuilder-StyledInputContainer">
          <div
            aria-hidden="true"
            class="QueryBuilder-StyledInputContent"
            data-target="query-builder.styledInputContent"
          ></div>
          <div class="QueryBuilder-InputWrapper">
            <div aria-hidden="true" class="QueryBuilder-Sizer" data-target="query-builder.sizer"></div>
            <input id="query-builder-test" name="query-builder-test" value="" autocomplete="off" type="text" role="combobox" spellcheck="false" aria-expanded="false" aria-describedby="validation-c761a23e-0a8e-499e-acea-ef0d0dd8e626" data-target="query-builder.input" data-action="
          input:query-builder#inputChange
          blur:query-builder#inputBlur
          keydown:query-builder#inputKeydown
          focus:query-builder#inputFocus
        " data-view-component="true" class="FormControl-input QueryBuilder-Input FormControl-medium" />
          </div>
        </div>
          <span class="sr-only" id="query-builder-test-clear">Clear</span>
          
  <button role="button" id="query-builder-test-clear-button" aria-labelledby="query-builder-test-clear query-builder-test-label" data-target="query-builder.clearButton" data-action="
                click:query-builder#clear
                focus:query-builder#clearButtonFocus
                blur:query-builder#clearButtonBlur
              " variant="small" hidden="hidden" type="button" data-view-component="true" class="Button Button--iconOnly Button--invisible Button--medium mr-1 px-2 py-0 d-flex flex-items-center rounded-1 color-fg-muted">    <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-x-circle-fill Button-visual">
    <path d="M2.343 13.657A8 8 0 1 1 13.658 2.343 8 8 0 0 1 2.343 13.657ZM6.03 4.97a.751.751 0 0 0-1.042.018.751.751 0 0 0-.018 1.042L6.94 8 4.97 9.97a.749.749 0 0 0 .326 1.275.749.749 0 0 0 .734-.215L8 9.06l1.97 1.97a.749.749 0 0 0 1.275-.326.749.749 0 0 0-.215-.734L9.06 8l1.97-1.97a.749.749 0 0 0-.326-1.275.749.749 0 0 0-.734.215L8 6.94Z"></path>
</svg>
</button>  

      </div>
      <template id="search-icon">
  <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-search">
    <path d="M10.68 11.74a6 6 0 0 1-7.922-8.982 6 6 0 0 1 8.982 7.922l3.04 3.04a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215ZM11.5 7a4.499 4.499 0 1 0-8.997 0A4.499 4.499 0 0 0 11.5 7Z"></path>
</svg>
</template>

<template id="code-icon">
  <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-code">
    <path d="m11.28 3.22 4.25 4.25a.75.75 0 0 1 0 1.06l-4.25 4.25a.749.749 0 0 1-1.275-.326.749.749 0 0 1 .215-.734L13.94 8l-3.72-3.72a.749.749 0 0 1 .326-1.275.749.749 0 0 1 .734.215Zm-6.56 0a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042L2.06 8l3.72 3.72a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215L.47 8.53a.75.75 0 0 1 0-1.06Z"></path>
</svg>
</template>

<template id="file-code-icon">
  <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-file-code">
    <path d="M4 1.75C4 .784 4.784 0 5.75 0h5.586c.464 0 .909.184 1.237.513l2.914 2.914c.329.328.513.773.513 1.237v8.586A1.75 1.75 0 0 1 14.25 15h-9a.75.75 0 0 1 0-1.5h9a.25.25 0 0 0 .25-.25V6h-2.75A1.75 1.75 0 0 1 10 4.25V1.5H5.75a.25.25 0 0 0-.25.25v2.5a.75.75 0 0 1-1.5 0Zm1.72 4.97a.75.75 0 0 1 1.06 0l2 2a.75.75 0 0 1 0 1.06l-2 2a.749.749 0 0 1-1.275-.326.749.749 0 0 1 .215-.734l1.47-1.47-1.47-1.47a.75.75 0 0 1 0-1.06ZM3.28 7.78 1.81 9.25l1.47 1.47a.751.751 0 0 1-.018 1.042.751.751 0 0 1-1.042.018l-2-2a.75.75 0 0 1 0-1.06l2-2a.751.751 0 0 1 1.042.018.751.751 0 0 1 .018 1.042Zm8.22-6.218V4.25c0 .138.112.25.25.25h2.688l-.011-.013-2.914-2.914-.013-.011Z"></path>
</svg>
</template>

<template id="history-icon">
  <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-history">
    <path d="m.427 1.927 1.215 1.215a8.002 8.002 0 1 1-1.6 5.685.75.75 0 1 1 1.493-.154 6.5 6.5 0 1 0 1.18-4.458l1.358 1.358A.25.25 0 0 1 3.896 6H.25A.25.25 0 0 1 0 5.75V2.104a.25.25 0 0 1 .427-.177ZM7.75 4a.75.75 0 0 1 .75.75v2.992l2.028.812a.75.75 0 0 1-.557 1.392l-2.5-1A.751.751 0 0 1 7 8.25v-3.5A.75.75 0 0 1 7.75 4Z"></path>
</svg>
</template>

<template id="repo-icon">
  <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-repo">
    <path d="M2 2.5A2.5 2.5 0 0 1 4.5 0h8.75a.75.75 0 0 1 .75.75v12.5a.75.75 0 0 1-.75.75h-2.5a.75.75 0 0 1 0-1.5h1.75v-2h-8a1 1 0 0 0-.714 1.7.75.75 0 1 1-1.072 1.05A2.495 2.495 0 0 1 2 11.5Zm10.5-1h-8a1 1 0 0 0-1 1v6.708A2.486 2.486 0 0 1 4.5 9h8ZM5 12.25a.25.25 0 0 1 .25-.25h3.5a.25.25 0 0 1 .25.25v3.25a.25.25 0 0 1-.4.2l-1.45-1.087a.249.249 0 0 0-.3 0L5.4 15.7a.25.25 0 0 1-.4-.2Z"></path>
</svg>
</template>

<template id="bookmark-icon">
  <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-bookmark">
    <path d="M3 2.75C3 1.784 3.784 1 4.75 1h6.5c.966 0 1.75.784 1.75 1.75v11.5a.75.75 0 0 1-1.227.579L8 11.722l-3.773 3.107A.751.751 0 0 1 3 14.25Zm1.75-.25a.25.25 0 0 0-.25.25v9.91l3.023-2.489a.75.75 0 0 1 .954 0l3.023 2.49V2.75a.25.25 0 0 0-.25-.25Z"></path>
</svg>
</template>

<template id="plus-circle-icon">
  <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-plus-circle">
    <path d="M8 0a8 8 0 1 1 0 16A8 8 0 0 1 8 0ZM1.5 8a6.5 6.5 0 1 0 13 0 6.5 6.5 0 0 0-13 0Zm7.25-3.25v2.5h2.5a.75.75 0 0 1 0 1.5h-2.5v2.5a.75.75 0 0 1-1.5 0v-2.5h-2.5a.75.75 0 0 1 0-1.5h2.5v-2.5a.75.75 0 0 1 1.5 0Z"></path>
</svg>
</template>

<template id="circle-icon">
  <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-dot-fill">
    <path d="M8 4a4 4 0 1 1 0 8 4 4 0 0 1 0-8Z"></path>
</svg>
</template>

<template id="trash-icon">
  <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-trash">
    <path d="M11 1.75V3h2.25a.75.75 0 0 1 0 1.5H2.75a.75.75 0 0 1 0-1.5H5V1.75C5 .784 5.784 0 6.75 0h2.5C10.216 0 11 .784 11 1.75ZM4.496 6.675l.66 6.6a.25.25 0 0 0 .249.225h5.19a.25.25 0 0 0 .249-.225l.66-6.6a.75.75 0 0 1 1.492.149l-.66 6.6A1.748 1.748 0 0 1 10.595 15h-5.19a1.75 1.75 0 0 1-1.741-1.575l-.66-6.6a.75.75 0 1 1 1.492-.15ZM6.5 1.75V3h3V1.75a.25.25 0 0 0-.25-.25h-2.5a.25.25 0 0 0-.25.25Z"></path>
</svg>
</template>

<template id="team-icon">
  <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-people">
    <path d="M2 5.5a3.5 3.5 0 1 1 5.898 2.549 5.508 5.508 0 0 1 3.034 4.084.75.75 0 1 1-1.482.235 4 4 0 0 0-7.9 0 .75.75 0 0 1-1.482-.236A5.507 5.507 0 0 1 3.102 8.05 3.493 3.493 0 0 1 2 5.5ZM11 4a3.001 3.001 0 0 1 2.22 5.018 5.01 5.01 0 0 1 2.56 3.012.749.749 0 0 1-.885.954.752.752 0 0 1-.549-.514 3.507 3.507 0 0 0-2.522-2.372.75.75 0 0 1-.574-.73v-.352a.75.75 0 0 1 .416-.672A1.5 1.5 0 0 0 11 5.5.75.75 0 0 1 11 4Zm-5.5-.5a2 2 0 1 0-.001 3.999A2 2 0 0 0 5.5 3.5Z"></path>
</svg>
</template>

<template id="project-icon">
  <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-project">
    <path d="M1.75 0h12.5C15.216 0 16 .784 16 1.75v12.5A1.75 1.75 0 0 1 14.25 16H1.75A1.75 1.75 0 0 1 0 14.25V1.75C0 .784.784 0 1.75 0ZM1.5 1.75v12.5c0 .138.112.25.25.25h12.5a.25.25 0 0 0 .25-.25V1.75a.25.25 0 0 0-.25-.25H1.75a.25.25 0 0 0-.25.25ZM11.75 3a.75.75 0 0 1 .75.75v7.5a.75.75 0 0 1-1.5 0v-7.5a.75.75 0 0 1 .75-.75Zm-8.25.75a.75.75 0 0 1 1.5 0v5.5a.75.75 0 0 1-1.5 0ZM8 3a.75.75 0 0 1 .75.75v3.5a.75.75 0 0 1-1.5 0v-3.5A.75.75 0 0 1 8 3Z"></path>
</svg>
</template>

<template id="pencil-icon">
  <svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-pencil">
    <path d="M11.013 1.427a1.75 1.75 0 0 1 2.474 0l1.086 1.086a1.75 1.75 0 0 1 0 2.474l-8.61 8.61c-.21.21-.47.364-.756.445l-3.251.93a.75.75 0 0 1-.927-.928l.929-3.25c.081-.286.235-.547.445-.758l8.61-8.61Zm.176 4.823L9.75 4.81l-6.286 6.287a.253.253 0 0 0-.064.108l-.558 1.953 1.953-.558a.253.253 0 0 0 .108-.064Zm1.238-3.763a.25.25 0 0 0-.354 0L10.811 3.75l1.439 1.44 1.263-1.263a.25.25 0 0 0 0-.354Z"></path>
</svg>
</template>

        <div class="position-relative">
                <ul
                  role="listbox"
                  class="ActionListWrap QueryBuilder-ListWrap"
                  aria-label="Suggestions"
                  data-action="
                    combobox-commit:query-builder#comboboxCommit
                    mousedown:query-builder#resultsMousedown
                  "
                  data-target="query-builder.resultsList"
                  data-persist-list=false
                  id="query-builder-test-results"
                ></ul>
        </div>
      <div class="FormControl-inlineValidation" id="validation-c761a23e-0a8e-499e-acea-ef0d0dd8e626" hidden="hidden">
        <span class="FormControl-inlineValidation--visual">
          <svg aria-hidden="true" height="12" viewBox="0 0 12 12" version="1.1" width="12" data-view-component="true" class="octicon octicon-alert-fill">
    <path d="M4.855.708c.5-.896 1.79-.896 2.29 0l4.675 8.351a1.312 1.312 0 0 1-1.146 1.954H1.33A1.313 1.313 0 0 1 .183 9.058ZM7 7V3H5v4Zm-1 3a1 1 0 1 0 0-2 1 1 0 0 0 0 2Z"></path>
</svg>
        </span>
        <span></span>
</div>    </div>
    <div data-target="query-builder.screenReaderFeedback" aria-live="polite" aria-atomic="true" class="sr-only"></div>
</query-builder></form>
          <div class="d-flex flex-row color-fg-muted px-3 text-small color-bg-default search-feedback-prompt">
            <a target="_blank" href="https://docs.github.com/en/search-github/github-code-search/understanding-github-code-search-syntax" data-view-component="true" class="Link color-fg-accent text-normal ml-2">
              Search syntax tips
</a>            <div class="d-flex flex-1"></div>
          </div>
        </div>
</div>

    </div>
</modal-dialog></div>
  </div>
  <div data-action="click:qbsearch-input#retract" class="dark-backdrop position-fixed" hidden data-target="qbsearch-input.darkBackdrop"></div>
  <div class="color-fg-default">
    
<div class="Overlay--hidden Overlay-backdrop--center" data-modal-dialog-overlay>
  <modal-dialog data-target="qbsearch-input.feedbackDialog" data-action="close:qbsearch-input#handleDialogClose cancel:qbsearch-input#handleDialogClose" role="dialog" id="feedback-dialog" aria-modal="true" aria-disabled="true" aria-labelledby="feedback-dialog-title" aria-describedby="feedback-dialog-description" data-view-component="true" class="Overlay Overlay-whenNarrow Overlay--size-medium Overlay--motion-scaleFade">
    <div data-view-component="true" class="Overlay-header">
  <div class="Overlay-headerContentWrap">
    <div class="Overlay-titleWrap">
      <h1 class="Overlay-title " id="feedback-dialog-title">
        Provide feedback
      </h1>
    </div>
    <div class="Overlay-actionWrap">
      <button data-close-dialog-id="feedback-dialog" aria-label="Close" type="button" data-view-component="true" class="close-button Overlay-closeButton"><svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-x">
    <path d="M3.72 3.72a.75.75 0 0 1 1.06 0L8 6.94l3.22-3.22a.749.749 0 0 1 1.275.326.749.749 0 0 1-.215.734L9.06 8l3.22 3.22a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215L8 9.06l-3.22 3.22a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042L6.94 8 3.72 4.78a.75.75 0 0 1 0-1.06Z"></path>
</svg></button>
    </div>
  </div>
</div>
      <div data-view-component="true" class="Overlay-body">        <!-- '"` --><!-- </textarea></xmp> --></option></form><form id="code-search-feedback-form" data-turbo="false" action="/search/feedback" accept-charset="UTF-8" method="post"><input type="hidden" data-csrf="true" name="authenticity_token" value="M6xIx9wgQy4fA4qlbJemFPXRdicts7OQd9NKiWDCAhTL5Ifmn8/CWVwht4y1okL3CBsWhZFBVR6+L3CfFHyfkw==" />
          <p>We read every piece of feedback, and take your input very seriously.</p>
          <textarea name="feedback" class="form-control width-full mb-2" style="height: 120px" id="feedback"></textarea>
          <input name="include_email" id="include_email" aria-label="Include my email address so I can be contacted" class="form-control mr-2" type="checkbox">
          <label for="include_email" style="font-weight: normal">Include my email address so I can be contacted</label>
</form></div>
      <div data-view-component="true" class="Overlay-footer Overlay-footer--alignEnd">          <button data-close-dialog-id="feedback-dialog" type="button" data-view-component="true" class="btn">    Cancel
</button>
          <button form="code-search-feedback-form" data-action="click:qbsearch-input#submitFeedback" type="submit" data-view-component="true" class="btn-primary btn">    Submit feedback
</button>
</div>
</modal-dialog></div>

    <custom-scopes data-target="qbsearch-input.customScopesManager">
    
<div class="Overlay--hidden Overlay-backdrop--center" data-modal-dialog-overlay>
  <modal-dialog data-target="custom-scopes.customScopesModalDialog" data-action="close:qbsearch-input#handleDialogClose cancel:qbsearch-input#handleDialogClose" role="dialog" id="custom-scopes-dialog" aria-modal="true" aria-disabled="true" aria-labelledby="custom-scopes-dialog-title" aria-describedby="custom-scopes-dialog-description" data-view-component="true" class="Overlay Overlay-whenNarrow Overlay--size-medium Overlay--motion-scaleFade">
    <div data-view-component="true" class="Overlay-header Overlay-header--divided">
  <div class="Overlay-headerContentWrap">
    <div class="Overlay-titleWrap">
      <h1 class="Overlay-title " id="custom-scopes-dialog-title">
        Saved searches
      </h1>
        <h2 id="custom-scopes-dialog-description" class="Overlay-description">Use saved searches to filter your results more quickly</h2>
    </div>
    <div class="Overlay-actionWrap">
      <button data-close-dialog-id="custom-scopes-dialog" aria-label="Close" type="button" data-view-component="true" class="close-button Overlay-closeButton"><svg aria-hidden="true" height="16" viewBox="0 0 16 16" version="1.1" width="16" data-view-component="true" class="octicon octicon-x">
    <path d="M3.72 3.72a.75.75 0 0 1 1.06 0L8 6.94l3.22-3.22a.749.749 0 0 1 1.275.326.749.749 0 0 1-.215.734L9.06 8l3.22 3.22a.749.749 0 0 1-.326 1.275.749.749 0 0 1-.734-.215L8 9.06l-3.22 3.22a.751.751 0 0 1-1.042-.018.751.751 0 0 1-.018-1.042L6.94 8 3.72 4.78a.75.75 0 0 1 0-1.06Z"></path>
</svg></button>
    </div>
  </div>
</div>
      <div data-view-component="true" class="Overlay-body">        <div data-target="custom-scopes.customScopesModalDialogFlash"></div>

        <div hidden class="create-custom-scope-form" data-target="custom-scopes.createCustomScopeForm">
        <!-- '"` --><!-- </textarea></xmp> --></option></form><form id="custom-scopes-dialog-form" data-turbo="false" action="/search/custom_scopes" accept-charset="UTF-8" method="post"><input type="hidden" data-csrf="true" name="authenticity_token" value="Lf2pXyIpHSOH600vfuNXHI0gKLkARb9L/lx4/EoK3t6K4RXzuYHMXGKgp7X0/5wGA/4ZDhVdA4qA8+WXGyibyQ==" />
          <div data-target="custom-scopes.customScopesModalDialogFlash"></div>

          <input type="hidden" id="custom_scope_id" name="custom_scope_id" data-target="custom-scopes.customScopesIdField">

          <div class="form-group">
            <label for="custom_scope_name">Name</label>
            <auto-check src="/search/custom_scopes/check_name" required>
              <input
                type="text"
                name="custom_scope_name"
                id="custom_scope_name"
                data-target="custom-scopes.customScopesNameField"
                class="form-control"
                autocomplete="off"
                placeholder="github-ruby"
                required
                maxlength="50">
              <input type="hidden" data-csrf="true" value="bF89An19D7HlfaAqkjcJWaNm5hnxwYl0AhlgaUrrj5c8271gMIAgyswCyam2cKZ4Tt+x2eAjzcr6MRFL6LQU+Q==" />
            </auto-check>
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For every patient i, this","    function returns the index of the first patient who died after i, after","    sorting the patients w.r.t. time of death.","    Refer to the definition of","    Cox proportional hazards log likelihood for details: https://goo.gl/k4TsEM","","    Parameters","    ----------","    X: numpy.ndarray","        m*n matrix of expression data","    T: numpy.ndarray","        m sized vector of time of death","    O: numpy.ndarray","        m sized vector of observed status (1 - censoring status)","","    Returns","    -------","    X: numpy.ndarray","        m*n matrix of expression data sorted w.r.t time of death","    T: numpy.ndarray","        m sized sorted vector of time of death","    O: numpy.ndarray","        m sized vector of observed status sorted w.r.t time of death","    at_risk: numpy.ndarray","        m sized vector of starting index of risk groups","    Output Examples","    ------","    (array([[ 0.        ,  0.        ,  0.        , ...,  0.        ,","        -0.53219468,  0.12068921],","       [ 0.        ,  0.        ,  0.        , ...,  0.        ,","         0.33331188,  0.12068921],","       [ 1.        ,  0.        ,  0.        , ...,  0.        ,","         0.61579785,  0.12068921],","       ...,","       [ 1.        ,  0.        ,  0.        , ...,  0.        ,","         0.18626446,  0.12068921],","       [ 0.        ,  1.        ,  0.        , ...,  0.        ,","         1.80174805,  0.12068921],","       [ 1.        ,  0.        ,  0.        , ...,  0.        ,","         0.08993093,  0.12068921]]), array([    6.,    33.,   181.,   279.,   315.,   327.,   359.,   705.,","         734.,  1322.]), array([ 0.,  0.,  0.,  0.,  0.,  0.,  0.,  0.,  0.,  1.]), array([0, 1, 2, 3, 4, 5, 6, 7, 8, 9], dtype=int32))","    \"\"\"","    tmp = list(T)","    T = np.asarray(tmp).astype('float64')","    order = np.argsort(T)","    sorted_T = T[order]","    at_risk = np.asarray([list(sorted_T).index(x) for x in sorted_T]).astype('int32')","    T = np.asarray(sorted_T)","    O = O[order]","    X = X[order]","    return X, T, O, at_risk","","def activation(x,method):","\tif method=='relu':","\t\treturn tf.nn.relu(x)","\telif method=='sigmoid':","\t\treturn tf.nn.sigmoid(x)","\telif method=='tanh':","\t\treturn tf.nn.tanh(x)","\telse:","\t\tprint(\"Activation method can only be on of these, relu, sigmoid and tanh\")","\t\treturn False","","","def inference(features,hidden_nodes,activation_type,keep_prob,isTrain):","    \"\"\" Build the survival model for further inference","    Args:","        features:  the survival co-variants data,","        hidden_nodes: a list, # of nodes in each hidden layer, eg: [20,30,20]","        activation_type: activation function, suggested default relu","\tkeep_prob: dropout keep_probability","\tisTrain: if or not training optimization process","    Returns:","        output: the output value of the neural network","    \"\"\"","    def f_train(h,k_p):","\t    #add dropout to training optimization process","\t    return tf.nn.dropout(h,k_p)","    def f_nontrain(h):","\t    #doesn't add dropout","\t    return h","    pre_hidden_units=0 #keep previous layer nodes number","    for i,hidden_units in enumerate(hidden_nodes):","        layer_index=i+1","        if layer_index==1:","            with tf.name_scope(\"hidden\"+str(layer_index)):","                weights=tf.Variable(tf.truncated_normal([FEATURE_SIZE, hidden_units], dtype=tf.float32)/20,name=\"weights\") # divided by 20 to generate smaller ouptut at initial, otherwise exp(output) will be inf","                #biases1=tf.Variable(tf.zeros([hidden_units]),name=\"biases\")","                #hidden1=tf.nn.relu(tf.matmul(features,weights1)+biases1)","\t\thidden=activation(tf.matmul(features,weights),activation_type)","                #hidden=tf.nn.relu(tf.matmul(features,weights))","\t\thidden_dropout=tf.cond(isTrain,lambda: f_train(hidden,keep_prob),lambda: f_nontrain(hidden))","                pre_hidden_units=hidden_units","        else:","            with tf.name_scope(\"hidden\"+str(layer_index)):","                weights=tf.Variable(tf.truncated_normal([pre_hidden_units, hidden_units], dtype=tf.float32)/20,name=\"weights\") # divided by 20 to generate smaller ouptut at initial, otherwise exp(output) will be inf","                #biases1=tf.Variable(tf.zeros([hidden_units]),name=\"biases\")","                #hidden1=tf.nn.relu(tf.matmul(features,weights1)+biases1)","\t\thidden=activation(tf.matmul(hidden_dropout,weights),activation_type)","\t\t#if add_dropout:","\t       #\t\thidden_dropout=tf.nn.dropout(hidden,keep_prob)","\t#\telse:","\t#\t\thidden_dropout=hidden","\t\t#hidden=tf.nn.relu(tf.matmul(hidden,weights))","\t\thidden_dropout=tf.cond(isTrain,lambda: f_train(hidden,keep_prob),lambda: f_nontrain(hidden))","                pre_hidden_units=hidden_units","","","    with tf.name_scope('output'):","        weights2=tf.Variable(tf.truncated_normal([hidden_units,NUM_CLASSES],dtype=tf.float32)/20,name=\"weights\")","        #biases2=tf.Variable(tf.zeros([NUM_CLASSES]),name='biases')","        #output=tf.matmul(hidden1,weights2)+biases2","        output=tf.matmul(hidden_dropout,weights2)","","    return output","","def inference_linear(features):","    #theata=tf.Variable(tf.truncated_normal([FEATURE_SIZE,1],dtype=tf.float32)/20,name=\"theta\")","    #keep the name scope the same as in NN (for group lasso and sparse_group_lasso weights filtering)","    with tf.name_scope(\"hidden1\"):","\tweights=tf.Variable(tf.truncated_normal([FEATURE_SIZE, 1], dtype=tf.float32)/20,name=\"weights\")","        output=tf.matmul(features,weights)","    #output=tf.matmul(features,theata)","    return output","","#def loss(inf_output,at_risk,censors,groups,batch_size,alpha,penaltyLambda):","#    \"\"\" Calculate the loss based on observed survival data and the predicted ones.","#","#    Args:","#        inf_weights1: the weights1 of the first hidden layer from inference","#        inf_output: the inference output","#        at_risk: ","#        censors: censor status of the patients ([batch_size])","#        batch_size: number of samples/patients data used for each training/validation/testing","#        groups: corresponding group id for each feature  ([feature_size])","#    Returns:","#        loss","#    \"\"\"","#    groups_size=len(set(groups)) # number of groups","#","#","#    partial_sum=tf.reverse(cumsum(tf.reverse(tf.exp(inf_output),axis=[-2]),batch_size),axis=[-2])+1","#    psum_at_risk=tf.gather(partial_sum,tf.reshape(at_risk,[-1])) # at_risk out of boundary?","#    log_at_risk=tf.log(tf.gather(partial_sum,tf.reshape(at_risk,[-1]))+1e-50)","#    diff=tf.reshape(tf.subtract(inf_output,log_at_risk),[-1])*(1-censors) #Only use non-censored data for difference calculation","#","#    all_variables=tf.get_collection(tf.GraphKeys.TRAINABLE_VARIABLES)","#    all_weights=[x for x in all_variables if re.search(\"weights\",x.name)]","#    weights1=[x for x in all_weights if re.search(\"hidden1/weights\",x.name)][0]","#","#","#    # group lasso regularization for the input-hidden1 weights","#    rg=0.0","#    group_index=0","#    for group_id in range(groups_size):","#        this_group_mask=[i for i,x in enumerate(groups) if x== group_id]","#        rg += tf.sqrt(tf.nn.l2_loss(tf.gather(weights1,tf.to_int64(this_group_mask))))","#","#","#","#    loss = - (tf.reduce_sum(diff)) + alpha*penaltyLambda*rg+(1-alpha)*tf.reduce_sum(penaltyLambda*tf.abs(inf_weights1))","#","#    return loss","","#def loss(inf_output,at_risk,censors,groups,batch_size,alpha,scale,reg_type=\"lasso\"):","#    \"\"\" Calculate the loss based on observed survival data and the predicted ones.","#","#    Args:","#        inf_output: the inference output","#        at_risk: #TODO","#        censors: censor status of the patients ([batch_size])","#        batch_size: number of samples/patients data used for each training/validation/testing","#        groups: corresponding group id for each feature  ([feature_size])","#        alpha: adjust the proportion of group penalty","#        scale: scale used for regularization adjust (float)","#    Returns:","#        loss","#    \"\"\"","#    groups_size=len(set(groups)) # number of groups","#","#","#    #TODO: consider the situation of Tied times","#    partial_sum=tf.reverse(cumsum(tf.reverse(tf.exp(inf_output),axis=[-2]),batch_size),axis=[-2])+1","#    #psum_at_risk=tf.gather(partial_sum,tf.reshape(at_risk,[-1])) # at_risk out of boundary?","#    log_at_risk=tf.log(tf.gather(partial_sum,tf.reshape(at_risk,[-1]))+1e-50)","#    diff=tf.reshape(tf.subtract(inf_output,log_at_risk),[-1])*(1-censors) #Only use non-censored data for difference calculation","#","#    if reg_type==\"lasso\":","#        reg=lasso(scale)","#    elif reg_type==\"l2\":","#        reg=l2(scale)","#    elif reg_type=='group_lasso':","#        reg=group_lasso(alpha,scale,groups)","#    elif reg_type=='sparse_group_lasso':","#        reg=sparse_group_lasso(alpha,scale,groups)","#","#    loss=-(tf.reduce_sum(diff))+reg","#","#    return loss","","def loss(inf_output,censors,groups,batch_size,alpha,scale,delta,reg_type=\"lasso\"):","    \"\"\" Calculate the loss based on observed survival data and the predicted ones.","","    Args:","        inf_output: the inference output","        censors: censor status of the patients ([batch_size])","        batch_size: number of samples/patients data used for each training/validation/testing","        groups: corresponding group id for each feature  ([feature_size])","        alpha: adjust the proportion of group penalty","        scale: scale used for regularization adjust (float)","        delta: a small value added in log transformed value to avoid log(0)","    Returns:","        loss (negative sum of log parital likelihood+regularizer)","    \"\"\"","    #groups_size=len(set(groups)) # number of groups","","","    #TODO: consider the situation of Tied times","    hazard=tf.squeeze(tf.exp(inf_output)) # samples are ordered by dates in increasing way during batch fetching","    hazard_condition_sum=tf.reverse(tf.cumsum(tf.reverse(hazard,[0])),[0]) #for given i, get sum of theta_j where dates_j\u003e=dates_i","    log_sum=tf.log(hazard_condition_sum+delta)","    diff=tf.subtract(tf.squeeze(inf_output),log_sum)*(1-censors) # only consider events Ci==1","","    if reg_type==\"lasso\":","        reg=lasso(scale)","    elif reg_type==\"l2\":","        reg=l2(scale)","    elif reg_type=='group_lasso':","        reg=group_lasso(alpha,scale,groups)","    elif reg_type=='sparse_group_lasso':","        reg=sparse_group_lasso(alpha,scale,groups)","    elif reg_type=='none':","        reg=0","","    loss=-(tf.reduce_sum(diff))+reg","","    return loss","","def hazard(inf_output):","    \"\"\" Calculate the survival hazard value","","    Args:","        inf_output: the inference 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