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The codes and documentation for my BSc project in the area of Cancer Genomics
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BSc-Project/3-TrainMogonet
AlirezaT99 cb2d4e6f16 Update 3rd stage 2 years ago
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README.md Update 3rd stage 2 years ago
runner.py Update 3rd stage 2 years ago

README.md

Train Mogonet

Having created the input matrices, we should feed the data to Mogonet architecture. Following these steps:

  1. Clone the repository: (preferably in Colab or a server with GPU available)
git clone https://github.com/txWang/MOGONET.git

  1. Configure the code. To do so, copy the output from previous stage to the MOGONET directory and add the directory name and info to main_biomarker.py and main_mogonet.py.

  2. Run main_mogonet.py to train the network and store the model

  3. Run main_biomarker.py to evaluate the feature importances and extract biomarkers from the model.

Alternative approach

Or you can configurate the runner.py code and run it.