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test data added

master
Faezeh Faez 5 years ago
parent
commit
45b0af2add
100 changed files with 4093 additions and 152 deletions
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graph_production/graph_generator.py View File

import numpy as np import numpy as np


graphs = [] graphs = []
indexes = [(1,12), (2,6),(3,4),(4,3),(6,2),(12,1)]
indexes = [(3,4)]
for tupp in indexes: for tupp in indexes:
graphs.append(nx.grid_2d_graph(tupp[0], tupp[1])) graphs.append(nx.grid_2d_graph(tupp[0], tupp[1]))


for g in range(len(indexes)): for g in range(len(indexes)):
curr_graph = nx.to_numpy_array(graphs[g]) curr_graph = nx.to_numpy_array(graphs[g])
curr_graph_att = np.ones((len(curr_graph), 60)) curr_graph_att = np.ones((len(curr_graph), 60))
scipy.io.savemat('produced_graphs/testgraph_{}_{}__.txt'.format(indexes[g][0], indexes[g][1], g), {'data': curr_graph})
scipy.io.savemat('produced_graphs/testgraph_{}_{}__.usr'.format(indexes[g][0], indexes[g][1], g), {'attributes': curr_graph_att})
scipy.io.savemat('produced_graphs/testgraph_{}_{}__.txt.mat'.format(indexes[g][0], indexes[g][1], g), {'data': curr_graph})
scipy.io.savemat('produced_graphs/testgraph_{}_{}__.usr.mat'.format(indexes[g][0], indexes[g][1], g), {'attributes': curr_graph_att})


print(graphs) print(graphs)

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graph_production/mat_tonxgraph.py View File

import numpy as np
import networkx as nx
import matplotlib.pyplot as plt
import scipy.io as sp

def graph_save(G, dir, i):
pos = nx.spring_layout(G)
nx.draw_networkx_nodes(G, pos, cmap=plt.get_cmap('jet'),
node_color='b', node_size=300)
nx.draw_networkx_labels(G, pos)
nx.draw_networkx_edges(G, pos, edgelist=G.edges(), arrows=False)
plt.savefig('{}.png'.format(i))
plt.close()
LENGTH = 6
# missing_dir = 'testgraph_12_,.mat_0_3_miss.txt'
for i in range(0, 11):
recons_dir = 'out/graphed_{}.mat'.format(i)
adj_matrix_orig = sp.loadmat(recons_dir)['original_data'].A
adj_matrix_p = sp.loadmat(recons_dir)['out_data'].A
graph_orig = nx.convert_matrix.from_numpy_matrix(adj_matrix_orig)
graph_p = nx.convert_matrix.from_numpy_matrix(adj_matrix_p)
graph_save(graph_orig,'', i+1)
graph_save(graph_p,'', -(i+1))

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