import torch from tqdm import tqdm from opt import opt from utils.metrics import evaluate import datasets from torch.utils.data import DataLoader from utils.comm import generate_model from utils.metrics import Metrics def test(): print('loading data......') test_data = getattr(datasets, opt.dataset)(opt.root, opt.test_data_dir, mode='test') test_dataloader = DataLoader(test_data, batch_size=1, shuffle=False, num_workers=opt.num_workers) total_batch = int(len(test_data) / 1) model = generate_model(opt) model.eval() # metrics_logger initialization metrics = Metrics(['recall', 'specificity', 'precision', 'F1', 'F2', 'ACC_overall', 'IoU_poly', 'IoU_bg', 'IoU_mean', 'Dice']) with torch.no_grad(): bar = tqdm(enumerate(test_dataloader), total=total_batch) for i, data in bar: img, gt = data['image'], data['label'] if opt.use_gpu: img = img.cuda() gt = gt.cuda() output = model(img) _recall, _specificity, _precision, _F1, _F2, \ _ACC_overall, _IoU_poly, _IoU_bg, _IoU_mean, _Dice = evaluate(output, gt, 0.5) metrics.update(recall= _recall, specificity= _specificity, precision= _precision, F1= _F1, F2= _F2, ACC_overall= _ACC_overall, IoU_poly= _IoU_poly, IoU_bg= _IoU_bg, IoU_mean= _IoU_mean, Dice = _Dice ) metrics_result = metrics.mean(total_batch) print("Test Result:") print('recall: %.4f, specificity: %.4f, precision: %.4f, F1: %.4f, F2: %.4f, ' 'ACC_overall: %.4f, IoU_poly: %.4f, IoU_bg: %.4f, IoU_mean: %.4f, IOU_Dice:%.4f' % (metrics_result['recall'], metrics_result['specificity'], metrics_result['precision'], metrics_result['F1'], metrics_result['F2'], metrics_result['ACC_overall'], metrics_result['IoU_poly'], metrics_result['IoU_bg'], metrics_result['IoU_mean'], metrics_result['Dice'])) if __name__ == '__main__': if opt.mode == 'test': print('--- PolypSeg Test---') test() print('Done')