Delete models directory

models/EUNet.py

@@ -1,180 +0,0 @@
-import torch
-import torch.nn as nn
-import torchvision.models as models
-
-from models.modules import LCA,ASM,GCM_up,GCM,CrossNonLocalBlock
-
-
-class ConvBlock(nn.Module):
-    def __init__(self, in_channels, out_channels, kernel_size, stride, padding):
-        super(ConvBlock, self).__init__()
-        self.conv = nn.Conv2d(in_channels, out_channels,
-                              kernel_size=kernel_size,
-                              stride=stride,
-                              padding=padding)
-        self.bn = nn.BatchNorm2d(out_channels)
-        self.relu = nn.ReLU(inplace=True)
-
-    def forward(self, x):
-        x = self.conv(x)
-        x = self.bn(x)
-        x = self.relu(x)
-        return x
-
-
-class DecoderBlock(nn.Module):
-    def __init__(self, in_channels, out_channels,
-                 kernel_size=3, stride=1, padding=1):
-        super(DecoderBlock, self).__init__()
-
-        self.conv1 = ConvBlock(in_channels, in_channels // 4, kernel_size=kernel_size,
-                               stride=stride, padding=padding)
-
-        self.conv2 = ConvBlock(in_channels // 4, out_channels, kernel_size=kernel_size,
-                               stride=stride, padding=padding)
-
-        self.upsample = nn.Upsample(scale_factor=2, mode='bilinear')
-
-    def forward(self, x):
-        x = self.conv1(x)
-        x = self.conv2(x)
-        x = self.upsample(x)
-        return x
-
-
-class SideoutBlock(nn.Module):
-    def __init__(self, in_channels, out_channels, kernel_size=3, stride=1, padding=1):
-        super(SideoutBlock, self).__init__()
-
-        self.conv1 = ConvBlock(in_channels, in_channels // 4, kernel_size=kernel_size,
-                               stride=stride, padding=padding)
-
-        self.dropout = nn.Dropout2d(0.1)
-
-        self.conv2 = nn.Conv2d(in_channels // 4, out_channels, 1)
-
-    def forward(self, x):
-        x = self.conv1(x)
-        x = self.dropout(x)
-        x = self.conv2(x)
-
-        return x
-
-
-class EuNet(nn.Module):
-    def __init__(self, num_classes):
-        super(ACSNet, self).__init__()
-
-        resnet = models.resnet34(pretrained=True)
-
-        # Encoder
-        self.encoder1_conv = resnet.conv1
-        self.encoder1_bn = resnet.bn1
-        self.encoder1_relu = resnet.relu
-        self.maxpool = resnet.maxpool
-        self.encoder2 = resnet.layer1
-        self.encoder3 = resnet.layer2
-        self.encoder4 = resnet.layer3
-        self.encoder5 = resnet.layer4
-
-
-        # Decoder
-        self.decoder5 = DecoderBlock(in_channels=512, out_channels=512)
-        self.decoder4 = DecoderBlock(in_channels=1024, out_channels=256)
-        self.decoder3 = DecoderBlock(in_channels=512, out_channels=128)
-        self.decoder2 = DecoderBlock(in_channels=256, out_channels=64)
-        self.decoder1 = DecoderBlock(in_channels=192, out_channels=64)
-
-        self.outconv = nn.Sequential(ConvBlock(64, 32, kernel_size=3, stride=1, padding=1),
-                                      nn.Dropout2d(0.1),
-                                      nn.Conv2d(32, num_classes, 1))
-
-        self.outenc = ConvBlock(512,256,kernel_size=1, stride=1,padding=0)
-
-        # Sideout
-        self.sideout2 = SideoutBlock(64, 1)
-        self.sideout3 = SideoutBlock(128, 1)
-        self.sideout4 = SideoutBlock(256, 1)
-        self.sideout5 = SideoutBlock(512, 1)
-
-
-
-        # global context module
-        self.gcm_up = GCM_up(256,64)
-        self.gcm_e5 = GCM_up(256, 256)#3
-
-        self.gcm_e4 = GCM_up(256, 128)#2
-        self.gcm_e3 = GCM_up(256, 64)#1
-        self.gcm_e2 = GCM_up(256, 64)#0
-
-
-        # adaptive selection module
-        self.asm4 = ASM(512, 1024)
-        self.asm3 = ASM(256, 512)
-        self.asm2 = ASM(128, 256)
-        self.asm1 = ASM(64, 192)
-
-        self.up1 = nn.Upsample(scale_factor=2, mode='bilinear')
-        self.up2 = nn.Upsample(scale_factor=4, mode='bilinear')
-        self.up3 = nn.Upsample(scale_factor=8, mode='bilinear')
-        self.up4 = nn.Upsample(scale_factor=16, mode='bilinear')
-
-        self.lca_cross_1 = CrossNonLocalBlock(512,256,256)
-        self.lca_cross_2 = CrossNonLocalBlock(1024,128,128)
-        self.lca_cross_3 = CrossNonLocalBlock(512,64,64)
-        self.lca_cross_4 = CrossNonLocalBlock(256,64,64)
-
-    def forward(self, x):
-        e1 = self.encoder1_conv(x)
-        e1 = self.encoder1_bn(e1)
-        e1 = self.encoder1_relu(e1)
-        e1_pool = self.maxpool(e1)
-        e2 = self.encoder2(e1_pool)
-        e3 = self.encoder3(e2)
-        e4 = self.encoder4(e3)
-        e5 = self.encoder5(e4)
-        e_ex = self.outenc(e5)
-
-        global_contexts_up = self.gcm_up(e_ex)
-
-
-        d5 = self.decoder5(e5)
-        out5 = self.sideout5(d5)
-        lc4 = self.lca_cross_1(d5,e4)
-        gc4 = self.gcm_e5(e_ex)
-        gc4 = self.up1(gc4)
-
-
-        comb4 = self.asm4(lc4, d5, gc4)
-
-        d4 = self.decoder4(comb4)
-        out4 = self.sideout4(d4)
-        lc3 = self.lca_cross_2(comb4,e3)
-        gc3 = self.gcm_e4(e_ex)
-        gc3 = self.up2(gc3)
-
-
-        comb3 = self.asm3(lc3, d4, gc3)
-
-
-        d3 = self.decoder3(comb3)
-        out3 = self.sideout3(d3)
-        lc2= self.lca_cross_3(comb3,e2)
-        gc2 = self.gcm_e3(e_ex)
-        gc2 = self.up3(gc2)
-
-        comb2 = self.asm2(lc2, d3, gc2)
-
-        d2 = self.decoder2(comb2)
-        out2 = self.sideout2(d2)
-        lc1 = self.lca_cross_4(comb2,e1)
-        gc1 = self.gcm_e2(e_ex)
-        gc1 = self.up4(gc1)
-
-        comb1 = self.asm1(lc1, d2, gc1)
-
-        d1 = self.decoder1(comb1
-        out1 = self.outconv(d1)
-
-        return torch.sigmoid(out1), torch.sigmoid(out2), torch.sigmoid(out3), \
-            torch.sigmoid(out4), torch.sigmoid(out5)

models/__init__.py

@@ -1 +0,0 @@
-from .ACSNet import ACSNet

models/modules.py

@@ -1,257 +0,0 @@
-import torch
-from torch import nn
-from torch.nn import functional as F
-from einops import rearrange, repeat
-import math
-
-
-
-def scaled_dot_product(q, k, v, mask=None):
-    d_k = q.size()[-1]
-    attn_logits = torch.matmul(q, k.transpose(-2, -1))
-    attn_logits = attn_logits / math.sqrt(d_k)
-    if mask is not None:
-        attn_logits = attn_logits.masked_fill(mask == 0, -9e15)
-    attention = F.softmax(attn_logits, dim=-1)
-    values = torch.matmul(attention, v)
-    return values, attention
-
-""" Fusion Module"""
-
-
-class ASM(nn.Module):
-    def __init__(self, in_channels, all_channels):
-        super(ASM, self).__init__()
-        self.non_local = NonLocalBlock(in_channels)
-
-    def forward(self, lc, fuse, gc):
-        fuse = self.non_local(fuse)
-        fuse = torch.cat([lc, fuse, gc], dim=1)
-
-        return fuse
-
-
-"""
-Squeeze and Excitation Layer
-
-https://arxiv.org/abs/1709.01507
-
-"""
-
-
-class SELayer(nn.Module):
-    def __init__(self, channel, reduction=16):
-        super(SELayer, self).__init__()
-        self.avg_pool = nn.AdaptiveAvgPool2d(1)
-        self.fc = nn.Sequential(
-            nn.Linear(channel, channel // reduction, bias=False),
-            nn.ReLU(inplace=True),
-            nn.Linear(channel // reduction, channel, bias=False),
-            nn.Sigmoid()
-        )
-
-    def forward(self, x):
-        b, c, _, _ = x.size()
-        y = self.avg_pool(x).view(b, c)
-        y = self.fc(y).view(b, c, 1, 1)
-        return x * y.expand_as(x)
-
-
-"""
-Non Local Block
-
-https://arxiv.org/abs/1711.07971
-"""
-
-
-class NonLocalBlock(nn.Module):
-    def __init__(self, in_channels, inter_channels=None, sub_sample=True, bn_layer=True):
-        super(NonLocalBlock, self).__init__()
-
-        self.sub_sample = sub_sample
-
-        self.in_channels = in_channels
-        self.inter_channels = inter_channels
-
-        if self.inter_channels is None:
-            self.inter_channels = in_channels // 2
-            if self.inter_channels == 0:
-                self.inter_channels = 1
-
-        self.g = nn.Conv2d(in_channels=self.in_channels, out_channels=self.inter_channels,
-                           kernel_size=1, stride=1, padding=0)
-
-        if bn_layer:
-            self.W = nn.Sequential(
-                nn.Conv2d(in_channels=self.inter_channels, out_channels=self.in_channels,
-                          kernel_size=1, stride=1, padding=0),
-                nn.BatchNorm2d(self.in_channels)
-            )
-            nn.init.constant_(self.W[1].weight, 0)
-            nn.init.constant_(self.W[1].bias, 0)
-        else:
-            self.W = nn.Conv2d(in_channels=self.inter_channels, out_channels=self.in_channels,
-                               kernel_size=1, stride=1, padding=0)
-            nn.init.constant_(self.W.weight, 0)
-            nn.init.constant_(self.W.bias, 0)
-
-        self.theta = nn.Conv2d(in_channels=self.in_channels, out_channels=self.inter_channels,
-                               kernel_size=1, stride=1, padding=0)
-        self.phi = nn.Conv2d(in_channels=self.in_channels, out_channels=self.inter_channels,
-                             kernel_size=1, stride=1, padding=0)
-
-        if sub_sample:
-            self.g = nn.Sequential(self.g, nn.MaxPool2d(kernel_size=(2, 2)))
-            self.phi = nn.Sequential(self.phi, nn.MaxPool2d(kernel_size=(2, 2)))
-
-    def forward(self, x):
-
-        batch_size = x.size(0)
-
-        g_x = self.g(x).view(batch_size, self.inter_channels, -1)
-        g_x = g_x.permute(0, 2, 1)
-
-        theta_x = self.theta(x).view(batch_size, self.inter_channels, -1)
-        theta_x = theta_x.permute(0, 2, 1)
-        phi_x = self.phi(x).view(batch_size, self.inter_channels, -1)
-        f = torch.matmul(theta_x, phi_x)
-        f_div_C = F.softmax(f, dim=-1)
-
-        y = torch.matmul(f_div_C, g_x)
-        y = y.permute(0, 2, 1).contiguous()
-        y = y.view(batch_size, self.inter_channels, *x.size()[2:])
-        W_y = self.W(y)
-        z = W_y + x
-
-        return z
-
-
-#AGCM Module
-class CrossNonLocalBlock(nn.Module):
-    def __init__(self, in_channels_source,in_channels_target, inter_channels, sub_sample=False, bn_layer=True):
-        super(CrossNonLocalBlock, self).__init__()
-
-        self.sub_sample = sub_sample
-
-        self.in_channels_source = in_channels_source
-        self.in_channels_target = in_channels_target
-        self.inter_channels = inter_channels
-
-        """
-        if self.inter_channels is None:
-            self.inter_channels = in_channels // 2
-            if self.inter_channels == 0:
-                self.inter_channels = 1
-        """
-        self.g = nn.Conv2d(in_channels=self.in_channels_source, out_channels=self.inter_channels,
-                           kernel_size=1, stride=1, padding=0)
-        self.theta = nn.Conv2d(in_channels=self.in_channels_source, out_channels=self.inter_channels,
-                               kernel_size=1, stride=1, padding=0)
-        self.phi = nn.Conv2d(in_channels=self.in_channels_target, out_channels=self.inter_channels,
-                             kernel_size=1, stride=1, padding=0)
-
-        if bn_layer:
-            self.W = nn.Sequential(
-                nn.Conv2d(in_channels=self.inter_channels, out_channels=self.in_channels_target,
-                          kernel_size=1, stride=1, padding=0),
-                nn.BatchNorm2d(self.in_channels_target)
-            )
-            nn.init.constant_(self.W[1].weight, 0)
-            nn.init.constant_(self.W[1].bias, 0)
-
-        if sub_sample:
-            self.g = nn.Sequential(self.g, nn.MaxPool2d(kernel_size=(2, 2)))
-            self.phi = nn.Sequential(self.phi, nn.MaxPool2d(kernel_size=(2, 2)))
-
-    def forward(self,x,l):
-
-        batch_size = x.size(0)
-        g_x = self.g(x).view(batch_size, self.inter_channels, -1)
-        g_x = g_x.permute(0, 2, 1) #source
-        theta_x1 = self.theta(x)
-        theta_x = self.theta(x).view(batch_size, self.inter_channels, -1)
-        theta_x = theta_x.permute(0, 2, 1) #source
-        phi_x = self.phi(l).view(batch_size, self.inter_channels, -1) #target
-        f = torch.matmul(theta_x, phi_x)
-        f_div_C = F.softmax(f, dim=-1)
-        f_div_C = f_div_C.permute(0,2,1)
-        y = torch.matmul(f_div_C, g_x)
-        y = y.permute(0, 2, 1).contiguous()
-        y = y.view(batch_size, self.inter_channels, *l.size()[2:])
-        W_y = self.W(y)
-        z = W_y + l
-
-        return z
-
-
-
-#SFEM module
-class NonLocalBlock_PatchWise(nn.Module):
-
-    def __init__(self, in_channel, inter_channel, patch_factor):
-        super(NonLocalBlock_PatchWise, self).__init__()
-        "Embedding dimension must be 0 modulo number of heads."
-        self.in_channel = in_channel
-        self.patch_factor = patch_factor
-        self.patch_width = int(8/self.patch_factor)
-        self.patch_height = int(8/self.patch_factor)
-        self.stride_width = int(8/self.patch_factor)
-        self.stride_height = int(8/self.patch_factor)
-        self.unfold = nn.Unfold(kernel_size=(self.patch_width, self.patch_height), stride=(self.stride_width, self.stride_height))
-
-
-        self.adp = nn.AdaptiveAvgPool2d(8)
-        self.bottleneck = nn.Conv2d(64,inter_channel,kernel_size=(1,1))
-        self.non_block =  NonLocalBlock(self.in_channel)
-        self.adp_post = nn.AdaptiveAvgPool2d((8,8))
-
-
-    def forward(self, x):
-        batch_size = x.size(0)
-        x_up = self.adp(x)
-        x_up = self.unfold(x)
-        batch_size,p_dim,p_size = x_up.size()
-        x_up = x_up.view(batch_size,-1,self.in_channel,p_size)
-        final_output = torch.tensor([]).cuda()
-        index = torch.range(0,p_size,1,dtype=torch.int64).cuda()
-        for i in range(int(p_size)):
-            divide = torch.index_select(x_up, 3, index[i])
-            divide = divide.view(batch_size,-1,self.in_channel)
-            patch_width = int(divide.size(1) ** 0.5)
-            divide = divide.reshape(batch_size,self.in_channel,patch_width,patch_width) # tensor to operate on
-            attn = self.non_block(divide)
-            output = attn.view(batch_size,-1,self.in_channel,1)
-            final_output = torch.cat((final_output,output),dim=3)
-
-
-
-        final_output = final_output.view(batch_size, self.in_channel, 8,8)
-
-
-        return final_output
-
-
-class GCM_up(nn.Module):
-    def __init__(self, in_channels, out_channels):
-        super(GCM_up, self).__init__()
-        self.adp = nn.AdaptiveAvgPool2d((8,8))
-        self.patch1 = NonLocalBlock_PatchWise(in_channels,out_channels,2)
-        self.patch2 = NonLocalBlock_PatchWise(in_channels,out_channels,4)
-        self.patch3 = NonLocalBlock(256,64)
-        self.fuse = SELayer(3*256)
-        self.conv = nn.Conv2d(3*256, out_channels, 1, 1)
-        self.relu = nn.ReLU(inplace=True)
-
-
-    def forward(self, x):
-
-        b,c,h,w = x.size()
-        x = self.adp(x)
-        patch1 = self.patch1(x)
-        patch2 = self.patch2(x)
-        patch3 = self.patch3(x)
-        global_cat = torch.cat((patch1, patch2, patch3), dim=1)
-        fuse = self.relu(self.conv(self.fuse(global_cat)))
-        adp_post = nn.AdaptiveAvgPool2d((h,w))
-        fuse = adp_post(fuse)
-        return fuse