Organ-aware 3D lesion segmentation dataset and pipeline for abdominal CT analysis (ACM Multimedia 2025 candidate)
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organList.py 5.8KB

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  1. Organ = [
  2. "background",
  3. "spleen",
  4. "kidney_right",
  5. "kidney_left",
  6. "gallbladder",
  7. "liver",
  8. "stomach",
  9. "aorta",
  10. "inferior_vena_cava",
  11. "portal_vein_and_splenic_vein",
  12. "pancreas",
  13. "adrenal_gland_right",
  14. "adrenal_gland_left",
  15. "lung_upper_lobe_left",
  16. "lung_lower_lobe_left",
  17. "lung_upper_lobe_right",
  18. "lung_middle_lobe_right",
  19. "lung_lower_lobe_right",
  20. "vertebrae_L5",
  21. "vertebrae_L4",
  22. "vertebrae_L3",
  23. "vertebrae_L2",
  24. "vertebrae_L1",
  25. "vertebrae_T12",
  26. "vertebrae_T11",
  27. "vertebrae_T10",
  28. "vertebrae_T9",
  29. "vertebrae_T8",
  30. "vertebrae_T7",
  31. "vertebrae_T6",
  32. "vertebrae_T5",
  33. "vertebrae_T4",
  34. "vertebrae_T3",
  35. "vertebrae_T2",
  36. "vertebrae_T1",
  37. "vertebrae_C7",
  38. "vertebrae_C6",
  39. "vertebrae_C5",
  40. "vertebrae_C4",
  41. "vertebrae_C3",
  42. "vertebrae_C2",
  43. "vertebrae_C1",
  44. "esophagus",
  45. "trachea",
  46. "heart_myocardium",
  47. "heart_atrium_left",
  48. "heart_ventricle_left",
  49. "heart_atrium_right",
  50. "heart_ventricle_right",
  51. "pulmonary_artery",
  52. "brain",
  53. "iliac_artery_left",
  54. "iliac_artery_right",
  55. "iliac_vena_left",
  56. "iliac_vena_right",
  57. "small_bowel",
  58. "duodenum",
  59. "colon",
  60. "rib_left_1",
  61. "rib_left_2",
  62. "rib_left_3",
  63. "rib_left_4",
  64. "rib_left_5",
  65. "rib_left_6",
  66. "rib_left_7",
  67. "rib_left_8",
  68. "rib_left_9",
  69. "rib_left_10",
  70. "rib_left_11",
  71. "rib_left_12",
  72. "rib_right_1",
  73. "rib_right_2",
  74. "rib_right_3",
  75. "rib_right_4",
  76. "rib_right_5",
  77. "rib_right_6",
  78. "rib_right_7",
  79. "rib_right_8",
  80. "rib_right_9",
  81. "rib_right_10",
  82. "rib_right_11",
  83. "rib_right_12",
  84. "humerus left",
  85. "humerus right",
  86. "scapula_left",
  87. "scapula_right",
  88. "clavicula_left",
  89. "clavicula_right",
  90. "femur left",
  91. "femur right",
  92. "hip_left",
  93. "hip_right",
  94. "sacrum",
  95. "face",
  96. "gluteus_maximus_left",
  97. "gluteus_maximus_right",
  98. "gluteus_medius_left",
  99. "gluteus_medius_right",
  100. "gluteus_minimus_left",
  101. "gluteus_minimus_right",
  102. "autochthon_left",
  103. "autochthon_right",
  104. "iliopsoas_left",
  105. "iliopsoas_right",
  106. "urinary_bladder",
  107. ]
  108. color_table = {
  109. "MONAI_background":[122, 80, 187],
  110. "MONAI_spleen":[34, 132, 168],
  111. "MONAI_kidney_right":[221, 171, 184],
  112. "MONAI_kidney_left":[74, 230, 11],
  113. "MONAI_gallbladder":[102, 228, 188],
  114. "MONAI_liver":[1, 121, 13],
  115. "MONAI_stomach":[146, 195, 229],
  116. "MONAI_aorta":[40, 160, 100],
  117. "MONAI_inferior_vena_cava":[53, 78, 134],
  118. "MONAI_portal_vein_and_splenic_vein":[129, 184, 134],
  119. "MONAI_pancreas":[214, 200, 55],
  120. "MONAI_adrenal_gland_right":[56, 120, 22],
  121. "MONAI_adrenal_gland_left":[125, 219, 143],
  122. "MONAI_lung_upper_lobe_left":[68, 39, 139],
  123. "MONAI_lung_lower_lobe_left":[26, 113, 67],
  124. "MONAI_lung_upper_lobe_right":[101, 232, 79],
  125. "MONAI_lung_middle_lobe_right":[137, 239, 218],
  126. "MONAI_lung_lower_lobe_right":[194, 206, 105],
  127. "MONAI_vertebrae_L5":[236, 19, 34],
  128. "MONAI_vertebrae_L4":[22, 140, 161],
  129. "MONAI_vertebrae_L3":[159, 112, 112],
  130. "MONAI_vertebrae_L2":[32, 108, 237],
  131. "MONAI_vertebrae_L1":[238, 232, 151],
  132. "MONAI_vertebrae_T12":[161, 80, 182],
  133. "MONAI_vertebrae_T11":[139, 5, 13],
  134. "MONAI_vertebrae_T10":[144, 247, 253],
  135. "MONAI_vertebrae_T9":[91, 232, 192],
  136. "MONAI_vertebrae_T8":[152, 215, 83],
  137. "MONAI_vertebrae_T7":[96, 40, 23],
  138. "MONAI_vertebrae_T6":[121, 58, 204],
  139. "MONAI_vertebrae_T5":[249, 164, 1],
  140. "MONAI_vertebrae_T4":[18, 103, 85],
  141. "MONAI_vertebrae_T3":[87, 151, 18],
  142. "MONAI_vertebrae_T2":[151, 108, 83],
  143. "MONAI_vertebrae_T1":[91, 80, 61],
  144. "MONAI_vertebrae_C7":[106, 168, 130],
  145. "MONAI_vertebrae_C6":[10, 223, 63],
  146. "MONAI_vertebrae_C5":[208, 170, 158],
  147. "MONAI_vertebrae_C4":[71, 12, 46],
  148. "MONAI_vertebrae_C3":[180, 114, 134],
  149. "MONAI_vertebrae_C2":[125, 159, 58],
  150. "MONAI_vertebrae_C1":[250, 199, 232],
  151. "MONAI_esophagus":[174, 110, 227],
  152. "MONAI_trachea":[202, 112, 149],
  153. "MONAI_heart_myocardium":[39, 199, 100],
  154. "MONAI_heart_atrium_left":[177, 126, 81],
  155. "MONAI_heart_ventricle_left":[132, 31, 123],
  156. "MONAI_heart_atrium_right":[89, 225, 40],
  157. "MONAI_heart_ventricle_right":[198, 43, 6],
  158. "MONAI_pulmonary_artery":[153, 26, 128],
  159. "MONAI_brain":[240, 37, 212],
  160. "MONAI_iliac_artery_left":[60, 225, 19],
  161. "MONAI_iliac_artery_right":[87, 121, 120],
  162. "MONAI_iliac_vena_left":[195, 206, 14],
  163. "MONAI_iliac_vena_right":[143, 160, 69],
  164. "MONAI_small_bowel":[12, 210, 175],
  165. "MONAI_duodenum":[152, 203, 67],
  166. "MONAI_colon":[78, 89, 22],
  167. "MONAI_rib_left_1":[88, 150, 173],
  168. "MONAI_rib_left_2":[111, 226, 156],
  169. "MONAI_rib_left_3":[17, 216, 90],
  170. "MONAI_rib_left_4":[142, 100, 205],
  171. "MONAI_rib_left_5":[28, 11, 76],
  172. "MONAI_rib_left_6":[222, 134, 64],
  173. "MONAI_rib_left_7":[62, 226, 194],
  174. "MONAI_rib_left_8":[27, 2, 134],
  175. "MONAI_rib_left_9":[185, 17, 159],
  176. "MONAI_rib_left_10":[78, 158, 250],
  177. "MONAI_rib_left_11":[136, 103, 194],
  178. "MONAI_rib_left_12":[189, 217, 114],
  179. "MONAI_rib_right_1":[99, 89, 193],
  180. "MONAI_rib_right_2":[239, 82, 110],
  181. "MONAI_rib_right_3":[56, 246, 140],
  182. "MONAI_rib_right_4":[200, 246, 70],
  183. "MONAI_rib_right_5":[22, 130, 103],
  184. "MONAI_rib_right_6":[167, 237, 142],
  185. "MONAI_rib_right_7":[25, 105, 196],
  186. "MONAI_rib_right_8":[147, 155, 39],
  187. "MONAI_rib_right_9":[46, 249, 121],
  188. "MONAI_rib_right_10":[194, 98, 5],
  189. "MONAI_rib_right_11":[171, 150, 211],
  190. "MONAI_rib_right_12":[246, 157, 152],
  191. "MONAI_humerus left":[136, 241, 66],
  192. "MONAI_humerus right":[33, 194, 0],
  193. "MONAI_scapula_left":[95, 80, 237],
  194. "MONAI_scapula_right":[6, 159, 101],
  195. "MONAI_clavicula_left":[178, 49, 44],
  196. "MONAI_clavicula_right":[166, 223, 250],
  197. "MONAI_femur left":[5, 46, 192],
  198. "MONAI_femur right":[224, 147, 16],
  199. "MONAI_hip_left":[140, 5, 226],
  200. "MONAI_hip_right":[124, 24, 185],
  201. "MONAI_sacrum":[97, 72, 26],
  202. "MONAI_face":[99, 44, 166],
  203. "MONAI_gluteus_maximus_left":[233, 231, 63],
  204. "MONAI_gluteus_maximus_right":[41, 166, 135],
  205. "MONAI_gluteus_medius_left":[85, 251, 128],
  206. "MONAI_gluteus_medius_right":[11, 226, 181],
  207. "MONAI_gluteus_minimus_left":[221, 35, 246],
  208. "MONAI_gluteus_minimus_right":[46, 26, 29],
  209. "MONAI_autochthon_left":[156, 99, 135],
  210. "MONAI_autochthon_right":[6, 165, 13],
  211. "MONAI_iliopsoas_left":[11, 159, 198],
  212. "MONAI_iliopsoas_right":[201, 248, 72],
  213. "MONAI_urinary_bladder":[108, 46, 227],
  214. }