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The codes and documentation for my BSc project in the area of Cancer Genomics
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BSc-Project/3-TrainMogonet
AlirezaT99 cb2d4e6f16 Update 3rd stage 10 months ago
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README.md Update 3rd stage 10 months ago
runner.py Update 3rd stage 10 months ago

README.md

Train Mogonet

Having created the input matrices, we should feed the data to Mogonet architecture. Following these steps:

  1. Clone the repository: (preferably in Colab or a server with GPU available)
git clone https://github.com/txWang/MOGONET.git

  1. Configure the code. To do so, copy the output from previous stage to the MOGONET directory and add the directory name and info to main_biomarker.py and main_mogonet.py.

  2. Run main_mogonet.py to train the network and store the model

  3. Run main_biomarker.py to evaluate the feature importances and extract biomarkers from the model.

Alternative approach

Or you can configurate the runner.py code and run it.