BSc-Project/1-Preprocessing/README.md

Preprocess data

There are a number of scripts involved in this stage.

• expressionSummarizer.r prepares expression data columns and Id values
• geneIdConverter.r uses a Bioconductor annotation package to unify gene symbols
• prepare_mutation.py prepares mutation data by removing useless columns and unwanted rows.
• preprocessing.py this code generates a summary for each cancer that will be further used to aggregate in the next stage

by running each python script with a --help flag you will learn more about input args.