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test data added

master
Faezeh Faez 4 years ago
parent
commit
45b0af2add
100 changed files with 4093 additions and 152 deletions
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@@ -120,7 +76,7 @@
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<module name="untitled" />
<option name="INTERPRETER_OPTIONS" value="" />
@@ -143,8 +99,31 @@
<option name="INPUT_FILE" value="" />
<method v="2" />
</configuration>
<configuration name="graph_generator" type="PythonConfigurationType" factoryName="Python" temporary="true">
<module name="untitled" />
<option name="INTERPRETER_OPTIONS" value="" />
<option name="PARENT_ENVS" value="true" />
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<EXTENSION ID="PythonCoverageRunConfigurationExtension" runner="coverage.py" />
<option name="SCRIPT_NAME" value="$PROJECT_DIR$/graph_generator.py" />
<option name="PARAMETERS" value="" />
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<method v="2" />
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@@ -159,73 +138,29 @@
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+ 3
- 3
graph_production/graph_generator.py View File

@@ -3,7 +3,7 @@ import scipy.io
import numpy as np

graphs = []
indexes = [(1,12), (2,6),(3,4),(4,3),(6,2),(12,1)]
indexes = [(3,4)]
for tupp in indexes:
graphs.append(nx.grid_2d_graph(tupp[0], tupp[1]))

@@ -11,7 +11,7 @@ for tupp in indexes:
for g in range(len(indexes)):
curr_graph = nx.to_numpy_array(graphs[g])
curr_graph_att = np.ones((len(curr_graph), 60))
scipy.io.savemat('produced_graphs/testgraph_{}_{}__.txt'.format(indexes[g][0], indexes[g][1], g), {'data': curr_graph})
scipy.io.savemat('produced_graphs/testgraph_{}_{}__.usr'.format(indexes[g][0], indexes[g][1], g), {'attributes': curr_graph_att})
scipy.io.savemat('produced_graphs/testgraph_{}_{}__.txt.mat'.format(indexes[g][0], indexes[g][1], g), {'data': curr_graph})
scipy.io.savemat('produced_graphs/testgraph_{}_{}__.usr.mat'.format(indexes[g][0], indexes[g][1], g), {'attributes': curr_graph_att})

print(graphs)

+ 23
- 0
graph_production/mat_tonxgraph.py View File

@@ -0,0 +1,23 @@
import numpy as np
import networkx as nx
import matplotlib.pyplot as plt
import scipy.io as sp

def graph_save(G, dir, i):
pos = nx.spring_layout(G)
nx.draw_networkx_nodes(G, pos, cmap=plt.get_cmap('jet'),
node_color='b', node_size=300)
nx.draw_networkx_labels(G, pos)
nx.draw_networkx_edges(G, pos, edgelist=G.edges(), arrows=False)
plt.savefig('{}.png'.format(i))
plt.close()
LENGTH = 6
# missing_dir = 'testgraph_12_,.mat_0_3_miss.txt'
for i in range(0, 11):
recons_dir = 'out/graphed_{}.mat'.format(i)
adj_matrix_orig = sp.loadmat(recons_dir)['original_data'].A
adj_matrix_p = sp.loadmat(recons_dir)['out_data'].A
graph_orig = nx.convert_matrix.from_numpy_matrix(adj_matrix_orig)
graph_p = nx.convert_matrix.from_numpy_matrix(adj_matrix_p)
graph_save(graph_orig,'', i+1)
graph_save(graph_p,'', -(i+1))

+ 1
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_12_1__.txt.mat_0_1_miss.txt View File

@@ -0,0 +1 @@
9

+ 18
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_12_1__.txt.mat_0_1_part_edges.txt View File

@@ -0,0 +1,18 @@
0 1
1 0
1 2
2 1
2 3
3 2
3 4
4 3
4 5
5 4
5 6
6 5
6 7
7 6
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10 11
11 10

+ 1
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_12_1__.txt.mat_0_2_miss.txt View File

@@ -0,0 +1 @@
9 5

+ 14
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_12_1__.txt.mat_0_2_part_edges.txt View File

@@ -0,0 +1,14 @@
0 1
1 0
1 2
2 1
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5 6
6 5
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7 6
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+ 1
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_12_1__.txt.mat_0_3_miss.txt View File

@@ -0,0 +1 @@
9 5 3

+ 10
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_12_1__.txt.mat_0_3_part_edges.txt View File

@@ -0,0 +1,10 @@
0 1
1 0
5 6
6 5
6 7
7 6
9 10
10 9
10 11
11 10

+ 22
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_12_1__.txt.mat_0_orig_edges.txt View File

@@ -0,0 +1,22 @@
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1 0
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+ 1
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graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_12_1__.txt.mat_1_1_miss.txt View File

@@ -0,0 +1 @@
10

+ 18
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_12_1__.txt.mat_1_1_part_edges.txt View File

@@ -0,0 +1,18 @@
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1 0
1 2
2 1
2 3
3 2
3 4
4 3
4 5
5 4
5 6
6 5
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7 6
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10 11
11 10

+ 1
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_12_1__.txt.mat_1_2_miss.txt View File

@@ -0,0 +1 @@
10 6

+ 14
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_12_1__.txt.mat_1_2_part_edges.txt View File

@@ -0,0 +1,14 @@
0 1
1 0
1 2
2 1
2 3
3 2
3 4
4 3
6 7
7 6
7 8
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10 11
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+ 1
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_12_1__.txt.mat_1_3_miss.txt View File

@@ -0,0 +1 @@
10 6 3

+ 10
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_12_1__.txt.mat_1_3_part_edges.txt View File

@@ -0,0 +1,10 @@
0 1
1 0
3 4
4 3
6 7
7 6
7 8
8 7
10 11
11 10

+ 22
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_12_1__.txt.mat_1_orig_edges.txt View File

@@ -0,0 +1,22 @@
0 1
1 0
1 2
2 1
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4 3
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5 4
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8 9
9 8
9 10
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10 11
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+ 1
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_1_12__.txt.mat_0_1_miss.txt View File

@@ -0,0 +1 @@
5

+ 18
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_1_12__.txt.mat_0_1_part_edges.txt View File

@@ -0,0 +1,18 @@
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5 6
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6 7
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+ 1
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_1_12__.txt.mat_0_2_miss.txt View File

@@ -0,0 +1 @@
5 9

+ 14
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_1_12__.txt.mat_0_2_part_edges.txt View File

@@ -0,0 +1,14 @@
0 1
1 0
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2 1
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5 6
6 5
6 7
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9 10
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10 11
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+ 1
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_1_12__.txt.mat_0_3_miss.txt View File

@@ -0,0 +1 @@
5 9 11

+ 10
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_1_12__.txt.mat_0_3_part_edges.txt View File

@@ -0,0 +1,10 @@
0 1
1 0
1 2
2 1
2 3
3 2
5 6
6 5
6 7
7 6

+ 22
- 0
graph_production/produced_graphs/testImg_noTh_[12]/F922_I1P1M0_Iter_05/dumpKronEM_2019_11_11_247_20.45/testgraph_1_12__.txt.mat_0_orig_edges.txt View File

@@ -0,0 +1,22 @@
0 1
1 0
1 2
2 1
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graph_production/produced_graphs/testgraph_3_4__.txt.mat View File


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